Gives the inconsistencies between RF1 and threshold values

Source: R/check_raising_factor_inspector.R

The purpose of the check_raising_factor_inspector function is to provide a table of data that contains an inconsistency with the RF1 and the valid threshold (Default : 0.9 ; 1.1)

check_raising_factor_inspector(
  dataframe1,
  dataframe2,
  dataframe3,
  dataframe4,
  output,
  country_species = list(`1` = c("TUN", "ALB", "YFT", "BET", "SKJ"), `4` = c("LOT",
    "TUN", "ALB", "YFT", "BET", "SKJ", "LTA", "FRI", "BLF", "RAV*", "KAW", "FRZ", "BLT")),
  speciesfate = "6",
  vesselactivity = c("23", "25", "27", "29"),
  threshold = c(0.9, 1.1)
)

Arguments

dataframe1

data.frame expected. Csv or output of the function data_extraction, which must be done before using the check_raising_factor_inspector () function.

dataframe2

data.frame expected. Csv or output of the function data_extraction, which must be done before using the check_raising_factor_inspector () function.

dataframe3

data.frame expected. Csv or output of the function data_extraction, which must be done before using the check_raising_factor_inspector () function.

dataframe4

data.frame expected. Csv or output of the function data_extraction, which must be done before using the check_raising_factor_inspector () function.

output

character expected. Kind of expected output. You can choose between "message", "report" or "logical".

country_species

character expected. Default values: list("1" = c("TUN", "ALB", "YFT", "BET", "SKJ"), "4" = c("LOT", "TUN", "ALB", "YFT", "BET", "SKJ", "LTA", "FRI", "BLF", "RAV*", "KAW", "FRZ", "BLT")). list of the inventory of species (FAO code) used to calculate catch weight in RF1 by country (country code).

speciesfate

character expected. Default values: "6". Vector of inventory of fate used to calculate catch weight in RF1.

vesselactivity

character expected. Default values: c("23", "25", "27", "29"). Vector of inventory of vessel activity NOT used to calculate catch weight in RF1.

threshold

numeric expected. Default values: 0.9 and 1.1. Vector containing the lower and upper acceptable threshold for RF1.

Value

The function returns a character with output is "message", a data.frame with output is "report", a logical with output is "logical"

Details

The input dataframe must contain all these columns for the function to work :

  • trip_id Dataframe 2:

  • catch_id

  • catch_weight

  • speciesfate_code

  • species_fao_code

  • vesselactivity_code

  • trip_id Dataframe 3:

  • landing_id

  • landing_weight

  • species_fao_code

  • trip_id Dataframe 4:

  • trip_id

  • trip_end_full_trip_id

  • vessel_id

  • country_fleetcountry