R/obs_catch_or_sample_fate_by_species_group_control.R
obs_catch_or_sample_fate_by_species_group_control.RdIdentifies in the observer data all the species with an inconsistent fate according to their species group.
obs_catch_or_sample_fate_by_species_group_control(data)data.frame expected. All catches or samples during the time range selected.
The function returns one data.frame.
The input dataframes must contain all these columns for the function to work :
catch_id
speciesfate_code
species_faocode
speciesgroup_label
Or
samplemeasure_id
speciesfate_code
species_faocode
speciesgroup_label
Version 1.0
#Catch 1 is ok: the catch is a whale and its fate is code 1,
#Catch 2 is not ok: the catch is a bycatch and its fate is code 2,
#Catch 3 is not ok: the catch is a whale and its fate is code 4,
#Catch 4 is ok: the catch is a major tuna and its fate is code 6,
#Catch 5 is not ok: the catch is a bycatch and its fate is code 6,
#Catch 6 is ok: the catch is a minor tuna and its fate is code 15,
#Catch 7 is not ok: the catch is a major tuna and is fate is code 15,
#Catch 8 is not ok: the catch is a bycatch and its fate is code 10.
catch <- data.frame(catch_id = c("1", "2", "3", "4", "5", "6", "7", "8"),
speciesfate_code = c("1", "2", "4", "6", "6", "15", "15", "10"),
species_faocode = c("MYS", "ALM", "MYS", "YFT", "CNT", "LTA", "BET", "MOP"),
speciesgroup_label = c("Cetaceans", "Other bony fishes",
"Cetaceans", "Tunas nei", "Other bony fishes",
"Tunas nei", "Tunas nei", "Other bony fishes"))
obs_catch_or_sample_fate_by_species_group_control(catch)
#> catch_id speciesfate_code species_faocode speciesgroup_label logical
#> 1 1 1 MYS Cetaceans TRUE
#> 2 2 2 ALM Other bony fishes FALSE
#> 3 3 4 MYS Cetaceans FALSE
#> 4 4 6 YFT Tunas nei TRUE
#> 5 5 6 CNT Other bony fishes FALSE
#> 6 6 15 LTA Tunas nei TRUE
#> 7 7 15 BET Tunas nei FALSE
#> 8 8 10 MOP Other bony fishes FALSE