Reference

Shortcut functions Functions for run all or several parts of the t3 process.
t3_process()	T3 process compilation
data_model_initialisation()	Data model initialisation
t3_level1()	T3 process level 1
t3_level2()	T3 process level 2
t3_level3()	T3 process level 3
Level 3 tools Functions used in the process level 3.
catch_ci_calculator()	Compute final confidence interval
df2boot()	Translate Data frame to boot class
tunaboot()	Boostrap for Model Predictions
tunapredict()	Model Predictions
R6 class Link to the function for R6 class creations. Methods and processes associated are encapsulate in each class.
activities	R6 class activities
activity	R6 class activity
elementarycatch	R6 class elementarycatch
elementarycatches	R6 class elementarycatches
elementarylanding	R6 class elementarylanding
elementarylandings	R6 class elementarylandings
elementarysample	R6 class trip
elementarysamples	R6 class elementarysamples
elementarysampleraw	R6 class trip
elementarysamplesraw	R6 class elementarysamplesraw
elementarywellplan	R6 class elementarywellplan
elementarywellplans	R6 class elementarywellplans
full_trips	R6 class full_trips
list_t3	R6 class list_t3
object_model_data	R6 class object_model_data
samples	R6 class samples
standardisedsample	R6 class standardisedsample
standardisedsamples	R6 class standardisedsamples
standardisedsampleset	R6 class standardisedsampleset
standardisedsamplesets	R6 class standardisedsamplesets
trip	R6 class trip
trips	R6 class trips
well	R6 class well
wells	R6 class wells
wellset	R6 class wellset
wellsets	R6 class wellsets
Typing verification Functions for typing verification. Used before class creations for checking attributes consistency.
check_activity_code()	Attribute "activity_code" verification
check_activity_date()	Attribute "activity_date" verification
check_activity_id()	Attribute "activity_id" verification
check_activity_latitude()	Attribute "activity_latitude" verification
check_activity_longitude()	Attribute "activity_longitude" verification
check_activity_name()	Attribute "activity_name" verification
check_activity_number()	Attribute "activity_number" verification
check_catch_weight()	Attribute "catch_weight" verification
check_departure_date()	Attribute "departure_date" verification
check_elementarycatch_id()	Attribute "elementarycatch_id" verification
check_elementarylanding_id()	Attribute "elementarylanding_id" verification
check_elementarysampleraw_id()	Attribute "elementarysampleraw_id" verification
check_fish_hold_empty()	Attribute "fish_hold_empty" verification
check_fleet()	Attribute "fleet" verification
check_landing_category()	Attribute "landing_category" verification
check_landing_category_name()	Attribute "landing_category_name" verification
check_landing_date()	Attribute "landing_date" verification
check_landing_weight()	Attribute "landing_weight" verification
check_length_type()	Attribute "length_type" verification
check_logbook_availability()	Attribute "logbook_availability" verification
check_logbook_category()	Attribute "logbook_category" verification
check_logbook_category_name()	Attribute "logbook_category_name" verification
check_ocean()	Attribute "ocean" verification
check_sample_id()	Attribute "sample_id" verification
check_sample_length_class()	Attribute "sample_length_class" verification
check_sample_number_measured()	Attribute "sample_number_measured" verification
check_sample_number_measured_extrapolated_lf()	Attribute "sample_number_measured_extrapolated_lf" verification
check_sample_number_weighted()	Attribute "sample_number_weighted" verification
check_sample_quality()	Attribute "sample_quality" verification
check_sample_standardised_length_class_lf()	Attribute "sample_standardised_length_class_lf" verification
check_sample_total_count()	Attribute "sample_total_count" verification
check_sample_type()	Attribute "sample_type" verification
check_school_type()	Attribute "school_type" verification
check_set_count()	Attribute "set_count" verification
check_specie_code()	Attribute "specie_code" verification
check_specie_code3l()	Attribute "specie_code3l" verification
check_sub_sample_id()	Attribute "sub_sample_id" verification
check_sub_sample_id_total_count()	Attribute "sub_sample_id_total_count" verification
check_time_at_sea()	Attribute "time_at_sea" verification
check_trip_id()	Attribute "trip_id" verification
check_vessel_id()	Attribute "vessel_id" verification
check_vessel_type()	Attribute "vessel_type" verification
check_weighted_weight()	Attribute "weighted_weight" verification
check_well_global_weigth()	Attribute "well_global_weigth" verification
check_well_id()	Attribute "well_id" verification
check_well_minus10_weigth()	Attribute "well_minus10_weigth" verification
check_well_plus10_weigth()	Attribute "well_plus10_weigth" verification
check_wellplan_id()	Attribute "wellplan_id" verification
check_wellplan_number()	Attribute "wellplan_number" verification
check_wellplan_weight()	Attribute "wellplan_weight" verification
check_wellplan_weigth_category_code()	Attribute "wellplan_weigth_category_code" verification
check_wellplan_weigth_category_label()	Attribute "wellplan_weigth_category_label" verification
Diverse Diverse functions and tools.
object_r6()	R6 object
initiate_log_file()	Log file creation
initiate_directory()	Output directories creation